PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0039.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41877.8 Da    PI: 6.8878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.7e-131151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          i+n+  r  +f+k r+ ++KK +EL +LCd+e+++i+fs+t
  Bostr.18351s0039.1.p 11 IDNDKSRAKSFTKIRAWLMKKVNELTILCDIEACMIMFSPT 51
                          99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.096151IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-17160IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-5323IPR002100Transcription factor, MADS-box
CDDcd002662.62E-22485No hitNo description
SuperFamilySSF554551.44E-18493IPR002100Transcription factor, MADS-box
PfamPF003198.8E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTIKKLKLAW IDNDKSRAKS FTKIRAWLMK KVNELTILCD IEACMIMFSP TEVEPMVWPS  60
VEKALDLLDG FFVLPEIKKT KKKMSLQSYL KEKTKMVHEQ FMKTHKKQMD YVIDQLIVQL  120
HLGRRIDDLN LGEINALISF SRDNIILRRK ELKFVQYSPL RDPPVPPFEA QFEELKTTTN  180
DVFVRGGQCY ERAWKTDEET KRVSIGNAIW ANQSQYLIDK WVFASPEPPR TYQQIEMDMV  240
SYNKNLNPVL YQGSSSNENP NLDIEPVGSV SQQLQYHSMI NSPAMGMSQP REHLFDFMNH  300
ESRVKEEGRT VNNGSSQFHG RKNTIAINDG VRQEPPPNGT AVEERNDDED NAYVTSFGIY  360
QG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887803.11e-161LOW QUALITY PROTEIN: uncharacterized protein LOC110230145
TrEMBLQ9ZQE81e-134Q9ZQE8_ARATH; Uncharacterized protein At2g15660
STRINGBostr.18351s0039.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-113AGAMOUS-like 48