PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0050.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 326aa    MW: 37948.3 Da    PI: 9.7082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05240262123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+Cp+C+ +F ++  +  H+ +H
  Bostr.18351s0050.1.p 240 YTCPKCNDVFDTSQKFAAHMLSH 262
                           9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.39240267IPR007087Zinc finger, C2H2
SMARTSM003550.0039240262IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSIPNNSNF HGDDTNNRGF FPIKMNQNSK MVRSMFMTSD HTNHEDLFSS SPSFTSFQNS  60
HVSSSSFGFK NSHVKNHMMS DNYFSIKNHS HLTRVSFTQT ITNRYTAIIP TNTFDTVQYD  120
IERVKRAMNS KTNTFWNPTF SPPNIFDKQC EILNPKPLNV IFPRQDSAYC QHLDMFSLSS  180
NHKHDQRILQ DGRFLKNILK PTNLFKKTTD YIESGKNERS DDDQYDGRTH SLPYEKYGPY  240
TCPKCNDVFD TSQKFAAHML SHYKTETSKE REQRLRARNK RKYCKFNQEV HGKSQKTKQE  300
NRVNNGGKSD DEALKHFVII KEELV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885976.10.0uncharacterized protein LOC9319985
TrEMBLD7L4F80.0D7L4F8_ARALL; Zinc finger family protein
STRINGBostr.18351s0050.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-160C2H2-like zinc finger protein