PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0104.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 486aa    MW: 54476.1 Da    PI: 6.7082
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083083451954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Bostr.18351s0104.1.p 308 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 345
                           554458******************************88 PP
2BELL129.11.5e-41170241172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  Bostr.18351s0104.1.p 170 ERQELQSKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 241
                           79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-70112239IPR006563POX domain
PfamPF075261.3E-45118238IPR006563POX domain
PROSITE profilePS5007111.564286349IPR001356Homeobox domain
CDDcd000863.35E-11289350No hitNo description
SMARTSM003895.9E-9289353IPR001356Homeobox domain
SuperFamilySSF466895.99E-17290356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-27292355IPR009057Homeodomain-like
PfamPF059209.1E-18306345IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MATYYKTGSN EIYSRPNVQE FVPGNAMIYT NSFSETFPRE SINNVSASKE IQVLSSFGGA  60
SQMVEIQDSG SWRDQVDNDR SCFPVMMRLG LSSQIETSRS NNNNEYATQV VSGFTRTIHN  120
SKYLKAAQQL LDEAVNVKKA LKQFQPEGDK IYEEKEKILQ TNIAEIPQAE RQELQSKLSK  180
LLSILDEVDR RYKQYYHQMQ IVVSSFDVIA GCGAAKPYTA LALQTISRHF RCLRDAISGQ  240
ILVIRKSLGG EHDGSDGRGV GISRLRNVDQ QVRQQSALQR LGVMQPHTWR PQRGLPDSSV  300
LVLRAWLFEH FLHPYPKDSD KIMLARQTGL SRGQVSNWFI NARVRLWKPM VEEMYKEEFT  360
DALEENDPNL SSEITPQITE IQEQQTESSS HNGHVSGVAS SSIGQSTVAC GGDRFMMVTD  420
MTRNGSGGMS LTLGIQNFDA HGDVPMPSGI DNYENSISGT DFQYLNSRNH QHRLGSSKLL  480
HDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-15295353563Homeobox protein Meis2
3k2a_B9e-15295353563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0104.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467364.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_010467365.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_010467366.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLR0G4L10.0R0G4L1_9BRAS; Uncharacterized protein
STRINGBostr.18351s0104.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]