PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18351s0148.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 625aa MW: 71141.8 Da PI: 5.0496

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18351s0148.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.3e-14	370	417	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ ++ErrRR+++N+++ Lr+l+P+ +Kl+ a+iL A++Y+k+Lq Bostr.18351s0148.1.p 370 AKNLMAERRRRKKLNDRLYALRSLVPTI-----TKLDRASILGDAINYVKELQ 417 566789*******************7.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.1E-19	68	206	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.13	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-18	368	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-14	369	419	No hit	No description
Pfam	PF00010	1.9E-11	370	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-17	371	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-16	373	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MEVISCYLLI LLLLLLFSSN FLSSFAISSW LSLVKFSAVT RFLRSLVSSE NLVNQFERME 60 SNMQNLLEKL RPLVGARAWD YCVLWRLNED QRFVKWMGCC CGGTEHIAEN GTEEFSFGGC 120 RDVMFHHPRT KSCEFLSHLP SSIPLDSGIY AETLLTNQTS WLSESSEPSF MQETICTRVL 180 IPIPGGLVEL FATRHVTEDQ NVVDFVMGHC NMLMEDTVTI NMVVADEVES KPYGMLCSDI 240 QQKGSKEEDM MNLPSSYDIS ADQIRLNFLP QMSDYETQQH LKMKSDYHHQ ALGYIPENSN 300 KVMMGMNPFN TAAEDRNPVI GEPSLLVNEQ QVVNDKEMNE SGRLDSGSDC SDQIDDEDDP 360 KYKKSGKGKA KNLMAERRRR KKLNDRLYAL RSLVPTITKL DRASILGDAI NYVKELQNEA 420 KELQDELEEN SETEDGSNRQ QGGMSLNGTV VTGFHPGLSC NSNVPNVKQD VDLENSNDKG 480 QEMEPQVDVA QLDGREFFVK VICEYKPGGF TRLMEALDSL GLEVTNANTT RFLSLVSNVF 540 KVEKNDNEMV QAEHVRNSLL EITRNTSRGW HDDQMTTGSM QNEKNEVDYQ HYNDHQHHHH 600 PFDHQMNQSA HHNHHHQHIN HYHK*

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MEVISCYLLI LLLLLLFSSN FLSSFAISSW LSLVKFSAVT RFLRSLVSSE NLVNQFERME  60
SNMQNLLEKL RPLVGARAWD YCVLWRLNED QRFVKWMGCC CGGTEHIAEN GTEEFSFGGC  120
RDVMFHHPRT KSCEFLSHLP SSIPLDSGIY AETLLTNQTS WLSESSEPSF MQETICTRVL  180
IPIPGGLVEL FATRHVTEDQ NVVDFVMGHC NMLMEDTVTI NMVVADEVES KPYGMLCSDI  240
QQKGSKEEDM MNLPSSYDIS ADQIRLNFLP QMSDYETQQH LKMKSDYHHQ ALGYIPENSN  300
KVMMGMNPFN TAAEDRNPVI GEPSLLVNEQ QVVNDKEMNE SGRLDSGSDC SDQIDDEDDP  360
KYKKSGKGKA KNLMAERRRR KKLNDRLYAL RSLVPTITKL DRASILGDAI NYVKELQNEA  420
KELQDELEEN SETEDGSNRQ QGGMSLNGTV VTGFHPGLSC NSNVPNVKQD VDLENSNDKG  480
QEMEPQVDVA QLDGREFFVK VICEYKPGGF TRLMEALDSL GLEVTNANTT RFLSLVSNVF  540
KVEKNDNEMV QAEHVRNSLL EITRNTSRGW HDDQMTTGSM QNEKNEVDYQ HYNDHQHHHH  600
PFDHQMNQSA HHNHHHQHIN HYHK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	382	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269\|PubMed:12535353, ECO:0000269\|PubMed:24804694}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18351s0148.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884023.2	0.0	transcription factor ABORTED MICROSPORES
Swissprot	Q9ZVX2	0.0	AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBL	D7L887	0.0	D7L887_ARALL; Uncharacterized protein
STRING	Bostr.18351s0148.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7589	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.18351s0148.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Xu J, et al. ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis. Plant Cell, 2014. 26(4): p. 1544-1556 [PMID:24781116] Qian H, et al. Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis. Ecotoxicology, 2015. 24(1): p. 163-71 [PMID:25348600] Xiong SX, et al. The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana. Plant J., 2016. 88(6): p. 936-946 [PMID:27460657] Ferguson AC, et al. Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis. New Phytol., 2017. 213(2): p. 778-790 [PMID:27787905] Lou Y, et al. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. New Phytol., 2018. 217(1): p. 378-391 [PMID:28940573] Bi H,Fan W,Zhang P C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis. Front Plant Sci, 2017. 8: p. 1689 [PMID:29021807]