PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0178.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 271aa    MW: 29372.8 Da    PI: 8.2281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0178.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000136483221
                          EETTTTEEESSHHHHHHHHH CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                          +C+ Cgk F ++  L  H+r
  Bostr.18351s0178.1.p 64 PCTECGKQFGSWKALFGHMR 83
                          5******************8 PP
2zf-C2H212.60.00042150172123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k+F ++  L  Hi tH
  Bostr.18351s0178.1.p 150 FECGGCKKVFGSHQALGGHIETH 172
                           89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.936390IPR007087Zinc finger, C2H2
SMARTSM003550.00636385IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-96387IPR007087Zinc finger, C2H2
SuperFamilySSF576672.67E-86485No hitNo description
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-46585IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.67E-8145172No hitNo description
PfamPF139121.4E-4149172IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64150177IPR007087Zinc finger, C2H2
SMARTSM003551.3150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
SuperFamilySSF576672.55E-5210237No hitNo description
PROSITE profilePS501579.037211238IPR007087Zinc finger, C2H2
SMARTSM003550.06211233IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-9211235IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTNNTSDPNF DIPFASSNVT LPSYNQNPRK KRTKLTNNET GSSSSSRPKP VKKPDSDAPQ  60
IARPCTECGK QFGSWKALFG HMRCHPERQW RGINPPPNYK RGTNETAASS SSSLNFVFNA  120
SEEEHDVASC LLMLANGGAS TGTSVVEGRF ECGGCKKVFG SHQALGGHIE THKHVKGCFA  180
ITNLTEDPSH PQEIVDQDKS KSVKLVSGMN HRCNICFRVF SSGPALGGHM RCHWEKDQEE  240
NQVRAIDLNV PAATSSDASL GCSLDLRLGL *
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0178.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071270.0AC007127.7 Arabidopsis thaliana chromosome 2 clone T23A1 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565330.0DQ056533.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At2g17180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515478.11e-152PREDICTED: zinc finger protein ZAT2-like
SwissprotQ9SIJ01e-144ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLR0GB191e-147R0GB19_9BRAS; Uncharacterized protein
STRINGBostr.18351s0178.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-138C2H2-like zinc finger protein