PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0244.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 214aa    MW: 23316.7 Da    PI: 10.5505
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0244.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10179207432
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLe 32 
                           ++r +r++kNRe+A rsR+RK+++i  + 
  Bostr.18351s0244.1.p 179 DRRHKRMIKNRESAARSRARKQERISPYS 207
                           79**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-6171203No hitNo description
PfamPF001701.7E-7178204IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.22E-5180204No hitNo description
CDDcd147075.32E-13180204No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLSSPKHNKI NHSAFSISSS SSSSSSSSSS SSSSSSSSSS SSSSTSSSLG QNKSQVTMEE  60
VWKEINLGSL HYHRQLNIGH EPMLKNQNPN IFQDFLNMPL NQQPPPPPSS SSIVTSLYGS  120
PLPFPPPVTV LSLNSGVGFK FLDNTDTLFA SNPNSFEESA RFGCFGKKRG QDSDESKGDR  180
RHKRMIKNRE SAARSRARKQ ERISPYSSTF KFQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0244.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771341e-176GQ177134.1 Arabidopsis thaliana ecotype Cvi-0 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413527.13e-94PREDICTED: bZIP transcription factor 27-like
SwissprotQ7PCC63e-90FDP_ARATH; bZIP transcription factor 27
TrEMBLR0GAE81e-92R0GAE8_9BRAS; Uncharacterized protein
STRINGBostr.18351s0244.1.p1e-149(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.19e-87basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]