PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0316.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 277aa    MW: 32067.6 Da    PI: 6.9458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0316.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06248270123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+Cp+C+ +F ++ n+  H+++H
  Bostr.18351s0316.1.p 248 YTCPKCNGMFDTSQNFAAHMSSH 270
                           9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-4246270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.995248270IPR007087Zinc finger, C2H2
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSFIPNRFNS YGDDTINHRE FCPIEMDHNS KMVRSMFITS DCANHGDLSS SSPSLSCYPN  60
SHVSSSSFGF NNSHHHHMMR RNIDFVPGDD YLPITDNSHL TQVSFTQTIT NRYSSIVPTN  120
TLDTIQYGIE RVKRGMVSKT NSWNLTFHSS NIFDKQCKVL TPHEPFNVIF PCQDYAYRQQ  180
LDMFSSSSRH NHDQNILQDG RPLKFFIKPT IFFEKTTDSI SCEENKKNDD DQYDGRTHSL  240
PYEKYGPYTC PKCNGMFDTS QNFAAHMSSH YKIYISY
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0316.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425275.11e-140PREDICTED: uncharacterized protein LOC104710391
TrEMBLD7L0761e-127D7L076_ARALL; Uncharacterized protein
STRINGBostr.18351s0316.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-100C2H2-like zinc finger protein