PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18351s0410.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 121aa MW: 14138.8 Da PI: 9.8562

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18351s0410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.5	2.8e-30	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C+ C +++++C+++C +a+yfp+e +k++ ++klFG+ n++++++++p+ee++++++s+++e++a+++ Pv+G +g++++l +++ Bostr.18351s0410.1.p 9 RCCICITKKKNCPRNCEYAEYFPSELKKQYDSANKLFGTPNIIRMMRRAPPEEKQMLATSIIMEGNAWIKYPVSGGFGMVRNLMWKIVL 97 6************************************************************************************** PP DUF260 90 lkaelallkee 100 ka l++l+e+ Bostr.18351s0410.1.p 98 RKAYLHQLEEK 108 ***999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.864	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-24	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEALRNHGRC CICITKKKNC PRNCEYAEYF PSELKKQYDS ANKLFGTPNI IRMMRRAPPE 60 EKQMLATSII MEGNAWIKYP VSGGFGMVRN LMWKIVLRKA YLHQLEEKIK EEKKMTELHL 120 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18351s0410.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299784.2	2e-57	LOW QUALITY PROTEIN: LOB domain-containing protein 8
Swissprot	Q9ZUP0	1e-50	LBD8_ARATH; LOB domain-containing protein 8
TrEMBL	R0GAE3	1e-58	R0GAE3_9BRAS; Uncharacterized protein
STRING	Bostr.18351s0410.1.p	3e-85	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19510.1	6e-53	LOB domain-containing protein 8

Link Out ? help Back to Top
Phytozome	Bostr.18351s0410.1.p