PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18473s0167.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 291aa MW: 32168.2 Da PI: 4.9955

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18473s0167.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.7	3.6e-07	180	219	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L++l+P + +k Ka +L + ++YI+sLq Bostr.18473s0167.1.p 180 RRERISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 219 9****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-12	156	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.671	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.001	176	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	180	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-4	180	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.94E-7	180	223	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MSDPELLNPV MDPPIVDESP FSEIWPFSVN YGIQLPLNSG QDFTSRGELF GYSGNNYISA 60 AEESTVTELT GGGRKRRPLT SQDESSKMLS SCTSVTRLKE SSKKKMKVCG SEGENEDGLR 120 PECETSSGCG SKATEEKSPP KDYIHVRARR GQATDRHSLA ERFSKGFVTV TRVGLLLLAR 180 RERISERMKF LQDLIPGCNK IIGKALVLDE IINYIQSLQR QVEFLSMKLE VINSDVSTGP 240 KVGMFPSGDL NTLPIEIHQT LFDQQEADET RGSQPDWLHM GIDGNFDQAA *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18473s0167.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291662.1	1e-163	transcription factor bHLH79
Swissprot	Q9LV17	1e-110	BH079_ARATH; Transcription factor bHLH79
TrEMBL	R0HHA9	1e-162	R0HHA9_9BRAS; Uncharacterized protein
STRING	Bostr.18473s0167.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-112	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.18473s0167.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]