PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0333.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 165aa    MW: 17828.7 Da    PI: 9.0037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0333.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001686108123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+Cg  F+    L  H+r+H
  Bostr.18473s0333.1.p  86 HSCPICGVEFPMGQALGGHMRRH 108
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-636108No hitNo description
PfamPF139123.5E-123762IPR007087Zinc finger, C2H2
PROSITE profilePS501578.9953860IPR007087Zinc finger, C2H2
SMARTSM0035513860IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SMARTSM003550.06486108IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-1186109IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.84586113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MVARSEEIEK VEDTAAKCLM LLSRVGECGG GGGEKRVFRC KTCLKEFSSF QALGGHRASH  60
KKPINRDDLS LLGSLSNKKT KMTTSHSCPI CGVEFPMGQA LGGHMRRHRN EKASGALVTR  120
SFLPEATTVT TLESSGKRVA CLGLELDSME SLVNWKLELG RTIC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18473s0333.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3557751e-152AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBankCP0026861e-152CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankHQ6983081e-152HQ698308.1 Arabidopsis thaliana ecotype Landsberg erecta chromosome 3 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190194.12e-94C2H2-type zinc finger family protein
SwissprotQ9LX851e-95ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A178V7P09e-85A0A178V7P0_ARATH; Uncharacterized protein
STRINGBostr.18473s0333.1.p1e-116(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-89C2H2 family protein