PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18994s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 466aa    MW: 51001 Da    PI: 9.2444
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18994s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.4e-10140164126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +k + C+++ + G Ck+G++C+F H+
  Bostr.18994s0001.1.p 140 PKKRVCKYWKA-GNCKRGEQCQFLHS 164
                           699********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.324139166IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-8139165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7140164IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-8141164IPR000571Zinc finger, CCCH-type
SuperFamilySSF509787.51E-43165218IPR017986WD40-repeat-containing domain
SMARTSM003200.0016170209IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.6E-42172460IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029419.512177465IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.614177218IPR001680WD40 repeat
PfamPF117152.9E-5192224No hitNo description
PROSITE patternPS006780196210IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-7196210IPR020472G-protein beta WD-40 repeat
SMARTSM0032092249286IPR001680WD40 repeat
SuperFamilySSF509787.51E-43256461IPR017986WD40-repeat-containing domain
SMARTSM003204.4E-4294332IPR001680WD40 repeat
PfamPF004001.3E-5298332IPR001680WD40 repeat
PROSITE profilePS5008210.909316341IPR001680WD40 repeat
PROSITE patternPS006780319333IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-7319333IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9E-5335372IPR001680WD40 repeat
PfamPF004000.0016337371IPR001680WD40 repeat
PRINTSPR003201.4E-7359373IPR020472G-protein beta WD-40 repeat
SMARTSM0032066378419IPR001680WD40 repeat
SMARTSM003203.4422459IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDEATILDSV VQSSKVIIFS MFSMDYKAPR RYSHGRNFGV KRQQDFAADI VPRRPYVPYD  60
NGMKKGPNKL SRNLVWTSKE YKAPAGNRPR KNEANGSTKP PVLGTGYCVS NQPRKNAAYG  120
PRSSSISDTK GWGSRDNSSP KKRVCKYWKA GNCKRGEQCQ FLHSWSCFPG LAMVAALEGH  180
KKDLKGITLP HGSDKLFSVS SDGTLRIWDC HTGQCVHAIN LQAEAGSLIS EGPWVFLGLP  240
NAVKAFNVQT SKDLHLDGVV GQVHALTVAN GMLFAGTSSG RVSVWKATDS ESEPFKYFTT  300
LEGHHSGEVT CFVVGGQLLY SGSVDRTIKV WDLNTLQCIM TLRQHTDTVT SLLCWDKCLI  360
SSSLDGTIKV WACSENGSLK VVQTRRQEQS VHAICGMHDA EAKPIIFCSY QNGTVGIYDL  420
PSFQERGKMF STHTIGTLTI GPEGLLFSGD TSGNLRVWSL AATKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-2016546010322Tako8
6g6n_A5e-2016546010322Tako8
6g6n_B5e-2016546010322Tako8
6g6n_C5e-2016546010322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18994s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937710.0AB493771.1 Arabidopsis thaliana At5g40880 mRNA for hypothetical protein, partial cds, clone: RAAt5g40880.
GenBankBT0304000.0BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872138.10.0zinc finger CCCH domain-containing protein 59 isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGBostr.18994s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein