PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0382.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CPP
Protein Properties Length: 692aa    MW: 75946.2 Da    PI: 6.0089
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0382.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54e-16395433240
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  Bostr.19424s0382.1.p 395 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 433
                           689**********************************96 PP
2TCR51.12.7e-16480518139
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Bostr.19424s0382.1.p 480 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 518
                           589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-19394435IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.657395520IPR005172CRC domain
PfamPF036386.6E-12397432IPR005172CRC domain
SMARTSM011143.7E-17480521IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11482518IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MDKSQKNPTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF  60
TSPHVNSHRE SRFFRCHNSV DRSKPLESLD GSVSKEVVVS VVEDLNKEAS LEDEEETSLE  120
TSSELPQILK SDSQTPDRSD SPCTEDVAIE APSDLPLGDS GSSSEDVKMG LQKMLDVREE  180
NDTPDCGRLI SDELLVFRSP NDSEAFRCLV DKISSSERRF CAGVKSTKRP DITKDIPANG  240
SSNENEPLAV LPNESVFNLH RGGMRRRCLD FEMPGKRKKD IADDQQSVCD NKVAGESSSR  300
CVVPGIGLHL NAVALSSMDS NINVVHNYSI SGEIQKSFSG STTPIHSQDT VQETSDQAEN  360
EPVEEIPKAL VFPELNPGSL KKKMRVSEQA GEGESCKRCN CKKSKCLKLY CECFAAGVYC  420
IEPCSCIDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR SADSIMEAGD DASKTPASAR  480
HKRGCNCKKS NCLKKYCECY QGGVGCSINC RCEGCKNAFG RKEGSLLVIM ESKQEEDQET  540
YEKRTAKIQH NIDVSKEVEQ NPSSDQPSTP LPPYRHLVVH QPFLSKNRLP PTQFFLGTGS  600
SSFRKPDSDL TESQNEKKPF EPVTEDKTEI MPEILLNSPI ANIKAISPNS KRVSPPQLGS  660
SESGSILGRR GNGRKLILRS IPAFPSLNPN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1639951714120Protein lin-54 homolog
5fd3_B1e-1639951714120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264278RRRCLDFEMPGKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0382.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2040590.0AF204059.1 Arabidopsis thaliana CXC domain protein TSO1 (TSO1) mRNA, complete cds.
GenBankAF2063240.0AF206324.1 Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886693.10.0CRC domain-containing protein TSO1
SwissprotQ9LUI30.0TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLR0G3U80.0R0G3U8_9BRAS; Uncharacterized protein
STRINGBostr.19424s0382.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]