PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0519.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 353aa    MW: 39121.7 Da    PI: 6.1203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0519.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08264304954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Bostr.19424s0519.1.p 264 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 304
                           69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-13260318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.62E-11261309No hitNo description
Gene3DG3DSA:4.10.280.104.9E-12263314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6264304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGMTRESK IMEHQGSDLS WAGNELMARE LCSSSSYHQL INPNLSSCFM  60
SDVGVLGEIQ QQQHVGNRAS SIDPSSLDCL LSATSNSNNT STEDDEGISV LFSDCQTLWS  120
FGGVSSAESE NREITTETTT TIKPKSLKRN RGGDEGDEKG SHFRLVRPQD ESEKGGFKLI  180
YDENQSKTKK PRTEKERGCS SNISFQHSTC VSDNAEPDAE AIAQMKEMIY RAAAFRPVNF  240
GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT LVPGGTKMDT ASMLDEAANY  300
LKFLRAQVKA LENLRPKLDS TNLSFSSAPS FPLFHPSFIP LQNPNQIHHP EC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0519.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886170.0AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013050.0AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203640.0BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297948.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLR0G6090.0R0G609_9BRAS; Uncharacterized protein
STRINGBostr.19424s0519.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]