PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0575.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 217aa    MW: 23976.7 Da    PI: 5.3967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18174210135
                  GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+  nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++
  Bostr.19424s0575.1.p 174 CTnmNCNALTTPMWRRGPLGPKSLCNACGIKFRKEEE 210
                           55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.3E-8170216IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-10172210No hitNo description
PfamPF003202.5E-16174210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-12177210IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.22E-10178207No hitNo description
PROSITE profilePS5011411.53178206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MENELDLTLK LGLPNPTVET HLSLNTSTTT DDQGTNVVDG GRGDNNNDGG EVLNLRRALW  60
GDDEVIDDEG ARNNVDINIR VYNYVFQQFA GAPNTLNFDP YPMPPSPEPE PARDPVTPPA  120
SDEYVLIDVP ARRAHRNNTL LMANAWNESP NAYAKRLRGC SGYCGGRIEG TRKCTNMNCN  180
ALTTPMWRRG PLGPKSLCNA CGIKFRKEEE RKSKRN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0575.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488061.11e-102PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT457e-83GAT29_ARATH; GATA transcription factor 29
TrEMBLR0GBK11e-92R0GBK1_9BRAS; Uncharacterized protein
STRINGBostr.19424s0575.1.p1e-158(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.18e-69GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]