PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0583.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 455aa    MW: 49219.6 Da    PI: 6.7236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0583.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.3e-063453831154
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Bostr.19424s0583.1.p 345 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 383
                           5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-6344388No hitNo description
SuperFamilySSF474593.53E-11344398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-10348392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS PSSSSSMRAS SIESGGSAVF HDKLHHHHHS LAITDHHLQM  60
IGLGLSSQST VDQWNQSLLR GDSKAETSFG VMLQENLNLD ATSNANANTT SSTSSYQLQE  120
SDSSQHQALW RDPQSDFKPQ IMTNNNRGFF LDHQFSPHGS SSTDSSTVTC QGFAVDNSSN  180
TLYAAATTTP NSSSSMFHHH QAAGFGSSDQ QPSRNHQQSS LGYSQYGSST GNYDQMASSA  240
LPSTWFLRAS PPKPHSPLRF SNNATFWNPA AAGNAGPPPP HDASSNYFPA LQPPQIHAPS  300
FDEQPKNISE IRDSSSNEVK RGGGDQPAAK RAKSEAASPS PAFKVRKEKM GDRIAALQQL  360
VSPFGKTDAA SVLSEAIEYI KFLHQQVSAL SNPYMKSGAS LQHQQSDHPK ELEVSEEPDL  420
RSRGLCLVPV SSTFPVTHDT TVDFWTPTFG GTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0583.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297611.20.0transcription factor bHLH123
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLR0HLE70.0R0HLE7_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.19424s0583.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]