PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0710.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HB-PHD
Protein Properties Length: 723aa    MW: 80493.9 Da    PI: 4.5911
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.51.1e-13615660853
                           -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
              Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                           t+  ++ L   F++nryp ++++e LAk+l++t +qV +WF+NrR 
  Bostr.19424s0710.1.p 615 TDPKTQKLYLSFQENRYPEKATKESLAKELQMTITQVNNWFKNRRS 660
                           5667899999***********************************7 PP
2PHD40.56.4e-14267322151
                           SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                   PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                           +C+ Cg+     +++++lCdg C++ fH++Cl+++l++e++p +   wlC+ C++k
  Bostr.19424s0710.1.p 267 FCAKCGSkdLSVDNDIILCDGfCDRGFHQYCLEPPLRKEDIPPDdeGWLCPGCDCK 322
                           699***955445********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.54E-14257322IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-13263321IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.208265322IPR019787Zinc finger, PHD-finger
CDDcd155043.94E-28267319No hitNo description
PfamPF006281.9E-11267322IPR019787Zinc finger, PHD-finger
SMARTSM002491.5E-9267320IPR001965Zinc finger, PHD-type
PROSITE patternPS013590268319IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.0E-14595659IPR009057Homeodomain-like
PROSITE profilePS5007113.005605665IPR001356Homeobox domain
SMARTSM003893.7E-10607669IPR001356Homeobox domain
CDDcd000862.94E-12612659No hitNo description
SuperFamilySSF466892.55E-13612661IPR009057Homeodomain-like
PfamPF000464.8E-11615660IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MHRAASKRVT RSSGSGLKQI NVECGGEVNP TVDNVSEQGK TSQAGRYMPN DANENGHLHH  60
EIMENGKGIE EQKPTPQTGK KRSNPLKGEC SGSHRELVIG LPCRGQFEIH RSRSSTSSKR  120
LGGGGERNIL FSSHKRALRS KEAAGSSSVA ANNTPVGRPK KRNKTMKNGE VREDDEYTRI  180
KKKLRYFLNR INYEQNLIDA YSLEGWKGSS LEKLRPEKEL ERATKEILRR KLKIRDLFQH  240
LDTLCAEGSL PESLFDSDGE ISSEDIFCAK CGSKDLSVDN DIILCDGFCD RGFHQYCLEP  300
PLRKEDIPPD DEGWLCPGCD CKDDSLDLLN DSLGTKLSVS DSWEKIFPEA AAALAGGDQN  360
LNCDLPSDDS DDEEYDPDGL NNSDDNEESE NQDGSSDESD FTSASDEMIE SFKEGKDIMK  420
DIMALPSDDS EDDDYDPEAL TRDEDEIQES SNSDCTSDSE DIETSFKGNE SKQEDEDIPL  480
EDLGRKKSSL PYDAISESDA VLDDGLAGVP RRRNVERLNY KKLYDEEYEN VPSSSSDDDD  540
WDKTARMGKE NSESEDEGDA VILKQSSNAE DHTSKKPRRK SKRAHKTDTL EVPQQGPGEN  600
GCSGEKSSSS AYKKTDPKTQ KLYLSFQENR YPEKATKESL AKELQMTITQ VNNWFKNRRS  660
SINSKPVVSE EDVEKSKTGK EGECDTSIAG SSKQTMETES VAEKRSVALE STNPGSQKRR  720
RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178184RIKKKLR
2574582KKPRRKSKR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171050.0AK117105.1 Arabidopsis thaliana At3g19510 mRNA for putative homeobox protein HAT3.1, complete cds, clone: RAFL16-64-G01.
GenBankBT0059650.0BT005965.1 Arabidopsis thaliana At3g19510 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641273.10.0homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLR0G2870.0R0G287_9BRAS; Uncharacterized protein
STRINGBostr.19424s0710.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]