PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0725.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 386aa    MW: 42782.9 Da    PI: 7.375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0725.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09105129126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt+ C  f++ GtC+ G+ C+FaHg
  Bostr.19424s0725.1.p 105 YKTRMCAKFRA-GTCRNGELCNFAHG 129
                           9**********.*************8 PP
2zf-CCCH19.61.7e-061902041125
                           GTS.--TTTTT-SS-S CS
               zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                             G +C+yGdrC+F+H
  Bostr.19424s0725.1.p 190 F-GeECPYGDRCNFIH 204
                           5.449*********** PP
3zf-CCCH437.6e-14269295127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC+ f  tG+C++Gd+C+FaHg+
  Bostr.19424s0725.1.p 269 WKTRLCMKFDITGQCPFGDKCHFAHGQ 295
                           8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-15102137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-8103135IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793104131IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5105129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036179206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455179207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6179205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-8181205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-9264299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-15266298IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169268296IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11269295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QSSQQLQPSL  60
KRPRLVDDNV FNPASSFAPP SSSNPWMVPS LNPPPVNKGT ANIFYKTRMC AKFRAGTCRN  120
GELCNFAHGI EDLRQPPSNW QEIVGPPGQD RERERERDRE RPSLAPVGNN NWEDDQKIIL  180
RMKLCRKFCF GEECPYGDRC NFIHEDLSKF REDSGKLRES LAISVGTTAA DPPSVDNGTA  240
SNHIEVNRQG SIPVPAPMNN GGVVKTVYWK TRLCMKFDIT GQCPFGDKCH FAHGQAELHN  300
SVGRVEGEAV NAVASVSKQT VVPANESFAM KPTAQVTADS SGLNEEGRRK KCLLKWSDSK  360
KINRIYGDWI DDLPVGQKST KPVES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150160RERERERDRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0725.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297872.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_006297873.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLR0HYU20.0R0HYU2_9BRAS; Uncharacterized protein
STRINGBostr.19424s0725.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein