PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0764.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 210aa MW: 24131.6 Da PI: 7.8039

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0764.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.4	2.3e-17	30	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk +ps v k+ +++p kf++ g+k + +tle++ g + ++kl ++ ++++++ +GW+eF+ka+ +keg f++F+++++s+ Bostr.19424s0764.1.p 30 FFKLVLPSTVKKNM-MRIPPKFVKLQGSK--LPEVVTLETPVGFKRSIKL--KRIGQEIWIHEGWSEFAKAHSIKEGHFLLFEYNENSS 113 88989899888886.******666655..7889***********..******************************99999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v +f+ Bostr.19424s0764.1.p 114 F--RVIIFN 120 9..777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-24	24	124	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-23	25	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.72E-18	28	120	No hit	No description
PROSITE profile	PS50863	13.098	29	122	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-20	30	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.6E-16	30	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MVTTRKTKAR VTFSSHRRPP QDPESPLKTF FKLVLPSTVK KNMMRIPPKF VKLQGSKLPE 60 VVTLETPVGF KRSIKLKRIG QEIWIHEGWS EFAKAHSIKE GHFLLFEYNE NSSFRVIIFN 120 GSACEIEYPL DVVHISDSDD DIIQITDKEF IGTQGKREND QSVKGGDTEH KPNKRPRDIE 180 FDKILHDVDA LNSILVLKEE EEDERVFRG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0764.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229681	0.0	AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20.
GenBank	BT006139	0.0	BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds.
GenBank	BT008541	0.0	BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887460.1	1e-125	B3 domain-containing protein At3g18960
Swissprot	Q84R27	1e-113	Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBL	A0A178VGT7	1e-110	A0A178VGT7_ARATH; Uncharacterized protein
TrEMBL	A0A1J3J149	1e-110	A0A1J3J149_NOCCA; B3 domain-containing protein (Fragment)
STRING	Bostr.19424s0764.1.p	1e-152	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	1e-115	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0764.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]