PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0860.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 577aa    MW: 66084.1 Da    PI: 9.9863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0860.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.63e-08221265246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g+WT+ Ed+ l++ +++    +W  Ia  +g++Rt+ qc  r+q 
  Bostr.19424s0860.2.p 221 GPWTAAEDKNLLRIIEKKSLTDWVDIAVSLGTNRTPFQCLARYQR 265
                           89*****************************************96 PP
2Myb_DNA-binding41.82.4e-13273317146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r+ WT eEd++l  av+++G ++W ++a+ +  gR + qc +rw k
  Bostr.19424s0860.2.p 273 RKEWTVEEDDQLRAAVELFGDKDWQSVANVLK-GRAGTQCSNRWKK 317
                           789****************************9.***********98 PP
3Myb_DNA-binding53.94.2e-17324369147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + 
  Bostr.19424s0860.2.p 324 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 369
                           79******************************.***********986 PP
4Myb_DNA-binding50.26.1e-16376420147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+WT+eEde+l +a++++G   W+++a+++   Rt++qc  rw ++
  Bostr.19424s0860.2.p 376 RGKWTEEEDEKLREAIAEHGYS-WSKVASHLA-FRTDNQCLRRWKTL 420
                           89******************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.879121214IPR017877Myb-like domain
SMARTSM0071717125216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-6128144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-6190226IPR009057Homeodomain-like
SuperFamilySSF466895.59E-14198268IPR009057Homeodomain-like
PROSITE profilePS500908.804215267IPR017877Myb-like domain
SMARTSM007174.6E-8219269IPR001005SANT/Myb domain
PfamPF002492.1E-7221265IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-12227273IPR009057Homeodomain-like
SuperFamilySSF466898.61E-19252322IPR009057Homeodomain-like
PROSITE profilePS5129420.766268323IPR017930Myb domain
SMARTSM007178.2E-13272321IPR001005SANT/Myb domain
PfamPF002492.5E-12273317IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-16274322IPR009057Homeodomain-like
CDDcd001676.42E-10275319No hitNo description
SMARTSM007175.2E-14323372IPR001005SANT/Myb domain
PROSITE profilePS5129413.459324370IPR017930Myb domain
PfamPF002493.3E-15324369IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-21325375IPR009057Homeodomain-like
CDDcd001671.74E-10326368No hitNo description
SuperFamilySSF466891.22E-26350425IPR009057Homeodomain-like
PROSITE profilePS5129426.328371425IPR017930Myb domain
SMARTSM007171.1E-15375423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-21376420IPR009057Homeodomain-like
PfamPF002494.1E-15376420IPR001005SANT/Myb domain
CDDcd001674.87E-12378420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MPAASSSFPE AAQAFVDAIR RNRAYQKFLR RKLEVIEATI EQNEKHKKNV KIVKDFQASC  60
KRITKLALSQ RKDPRVELIS TRKSVPCDSS EGNDKKTSPL MLGPPENPCV ANYRMALEKY  120
PVSVERRNWS TEENKNLAKG LKQEVQKILL SEAIERSSDL EGSTYDIDTI NESIGNLEIT  180
PEMIRQFLPK INWDSLDIKD RSAAECEARW MSSEDPLINH GPWTAAEDKN LLRIIEKKSL  240
TDWVDIAVSL GTNRTPFQCL ARYQRSLNAS ILRKEWTVEE DDQLRAAVEL FGDKDWQSVA  300
NVLKGRAGTQ CSNRWKKSLR PTRKGRWSLE EDKRVKVAVT LFGSQNWHKI SQFVPGRTAT  360
QCRERWVNCL EPKINRGKWT EEEDEKLREA IAEHGYSWSK VASHLAFRTD NQCLRRWKTL  420
YPHQVALLQE ARRLQKEAIV GNFVDRESER PAHVTGTILA LPEISLEPEP DSVALKKKRK  480
AKRKKSDAER QPKRRRKGLE KCSGDVSRQE NETVCENEPN NGGEERLLDW NGITRNKDEG  540
ANVLQKHQTT PLVLKKLTPR RKVSAVVPIK NQDAPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-292004199159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-292004199159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477495KRKAKRKKSDAERQPKRRR
2482496RKKSDAERQPKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0860.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296998.10.0snRNA-activating protein complex subunit 4
TrEMBLR0G3G90.0R0G3G9_9BRAS; Uncharacterized protein
STRINGBostr.19424s0860.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1