PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0977.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB_related

Protein Properties

Length: 139aa MW: 16006.5 Da PI: 9.669

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0977.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.8e-14	90	133	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+teE+ l++ + k++G+g+WktI+r+ k+R + q+ s+ qk Bostr.19424s0977.1.p 90 PWSTEEHRLFLYGLKKYGKGDWKTISRECVKTRNPMQVASHAQK 133 7****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	28	3	50	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	13.759	83	138	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-13	86	133	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-5	87	137	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.9E-11	87	133	IPR006447	Myb domain, plants
CDD	cd00167	2.85E-9	90	133	No hit	No description
Pfam	PF00249	9.2E-9	90	133	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-9	90	130	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MDAIPRWTRD DDKALVQFPV DSPFFLENIA QLLKKPFEEV KYYYKALVDD VALIESGKVA 60 LPKYPEDDYV SLTEATQSKN LGKKIRKEIP WSTEEHRLFL YGLKKYGKGD WKTISRECVK 120 TRNPMQVASH AQKPAAKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0977.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011560	1e-40	AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBank	ATAC013428	1e-40	AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBank	CP002686	1e-40	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884799.1	2e-63	transcription factor DIVARICATA
Swissprot	Q9FNN6	3e-26	SRM1_ARATH; Transcription factor SRM1
TrEMBL	D7L911	5e-62	D7L911_ARALL; Uncharacterized protein
STRING	Bostr.19424s0977.1.p	2e-98	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14731	7	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10580.2	2e-64	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0977.1.p

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]