PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0981.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB_related

Protein Properties

Length: 188aa MW: 21310.9 Da PI: 7.145

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0981.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6e-16	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+teE+ l++d+ +++ +g+Wk+I+r+ k+R++kq+ s+ qky Bostr.19424s0981.1.p 95 PWSTEEHRLFLDGLEKYKKGDWKSISRECVKTRSPKQVASHAQKY 139 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	43	3	54	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.81	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-15	91	144	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-9	92	142	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	5.1E-14	92	143	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.7E-10	93	139	IPR009057	Homeodomain-like
CDD	cd00167	2.97E-10	95	140	No hit	No description
Pfam	PF00249	2.4E-12	95	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MASIPQWTWD DHKRFELALV QFPEGSPSFL EDTAQLLQKP LEEVKYYYEA LVDDVALIES 60 GKVALPKYPE DDDVSLTEAQ SNNLGKKRHV QKGIPWSTEE HRLFLDGLEK YKKGDWKSIS 120 RECVKTRSPK QVASHAQKYF ARQNPNRKKG KRLSIHDITL ESTTGKPHFG KQNPPDDDES 180 QGSCLGA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0981.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010486370.1	5e-75	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	9e-35	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A384LJQ3	2e-72	A0A384LJQ3_ARATH; Uncharacterized protein
TrEMBL	A8MRL4	1e-72	A8MRL4_ARATH; Homeodomain-like superfamily protein
TrEMBL	Q9SQY8	2e-72	Q9SQY8_ARATH; Homeodomain-like superfamily protein
STRING	Bostr.19424s0981.1.p	1e-137	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14731	7	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10580.2	2e-77	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0981.1.p

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]