PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s1046.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 255aa    MW: 28891.3 Da    PI: 6.0073
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s1046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.6e-1428108286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W+++ + +Liea  ++  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+   +       t+ +fd+l+
  Bostr.19424s1046.1.p  28 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnssHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPLS-------TWCFFDRLD 108
                           *************************************9666667788******************9987664.......588888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2526109No hitNo description
SMARTSM005953.1E-435116IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
METTPETQSK PHHQSGSHRL PAGREDWWSE DATATLIEAW GDRYVNLNRG NLRQNDWKEV  60
ADAVNSSHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPLST WCFFDRLDFL IGPVMKKSSG  120
GVVKSALINP NLNPTGSKST GSSLDDDDDD DDDDDDDDDA GDWGFVVRKH RRVEDVDPSE  180
GSAYRELARS ILKLGEAFER IEGKKQQMMI ELEKQRMEVA KELELQRMNM LMEMQLELEK  240
SKHGKRRAGS GKKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s1046.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546080.0AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298354.11e-159trihelix transcription factor ASIL2
SwissprotQ9LJG86e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0G6K61e-157R0G6K6_9BRAS; Uncharacterized protein
STRINGBostr.19424s1046.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-137sequence-specific DNA binding transcription factors