PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s1061.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 264aa    MW: 29546.1 Da    PI: 7.0341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s1061.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-083278347
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                          +WT+eE + + +a + +  +   +W ++a++++ g+t  ++ + + k+
  Bostr.19424s1061.2.p 32 SWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVFDVMNQYSKL 78
                          7*****************99*************.********999875 PP
2Myb_DNA-binding39.99.9e-13128172347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Bostr.19424s1061.2.p 128 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 172
                           8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.6662881IPR017884SANT domain
SMARTSM007172.5E-82981IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-43177IPR009057Homeodomain-like
SuperFamilySSF466898.61E-123185IPR009057Homeodomain-like
PfamPF002491.9E-63277IPR001005SANT/Myb domain
CDDcd001671.27E-73378No hitNo description
PROSITE profilePS5129419.439121177IPR017930Myb domain
SuperFamilySSF466892.51E-15123176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17124176IPR006447Myb domain, plants
SMARTSM007171.7E-10125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11125177IPR009057Homeodomain-like
PfamPF002494.2E-10128172IPR001005SANT/Myb domain
CDDcd001674.21E-9128172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
METLHPLSHL PISDHRFIVQ EMMSLHSSSS SSWTKEENKM FERALAIYAE DSPDRWFKVA  60
SMIPGKTVFD VMNQYSKLEE DVSDIEAGRV PIPGYPAASS PLAFDPDTCR KRPNGPRGSD  120
HDRKKGVPWT EEEHRRFLLG LLKYGKGDWR NISRNFVVSK TPTQVASHAQ KYYQRQLSGA  180
KDKRRPSIHD ITTVNLLNAN LNRSFSDHSD ILPDLGFIDK DNAEEGVIFM GQNLSSETLF  240
SPSPTSFDAA INFAGANAFS ARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1623110188RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s1061.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY0912650.0AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY5503080.0AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486776.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H72e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7L9W11e-178D7L9W1_ARALL; Myb family transcription factor
STRINGBostr.19424s1061.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-178MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]