PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s1150.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 176aa MW: 18001.2 Da PI: 10.0439

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s1150.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.5	3.9e-12	141	166	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ G C +GdrC+FaHg+ Bostr.19424s1150.2.p 141 YKTKICERFSK-GNCTFGDRCHFAHGE 166 9********.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54791	1.9E-15	30	111	IPR004088	K Homology domain, type 1
SMART	SM00322	2.5E-11	40	110	IPR004087	K Homology domain
Gene3D	G3DSA:3.30.1370.10	2.6E-16	40	109	IPR004088	K Homology domain, type 1
PROSITE profile	PS50084	14.571	41	105	IPR004088	K Homology domain, type 1
Pfam	PF00013	3.0E-12	43	107	IPR004088	K Homology domain, type 1
CDD	cd00105	1.06E-12	43	105	No hit	No description
Gene3D	G3DSA:4.10.1000.10	1.3E-16	135	170	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-9	140	170	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.215	140	167	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-8	140	166	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-9	141	166	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MTNMGPPMPQ VSRNMQGSGG GGRFSGRGES GPGHVSSFGA SATAKISVDA SLAGAIIGKG 60 GVSSKQICRQ TGAKLSIQDH ERDPNLKNIE LEGSFEQINE ASAMVRELIG RLNSAAKKPP 120 GGGGGGGSMG SEGKPHPGSN YKTKICERFS KGNCTFGDRC HFAHGEAELR RSGIA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00113	ampDAP	Transfer from AT3G12130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s1150.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069473	0.0	AC069473.4 Arabidopsis thaliana chromosome 3 BAC T21B14 genomic sequence, complete sequence.
GenBank	AK227373	0.0	AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBank	AP002063	0.0	AP002063.2 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T23B7.
GenBank	AY085746	0.0	AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBank	BT025032	0.0	BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407365.1	1e-107	zinc finger CCCH domain-containing protein 36
Refseq	XP_020888304.1	1e-108	zinc finger CCCH domain-containing protein 36 isoform X2
Swissprot	Q9C7C3	1e-101	C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBL	E4MYD4	1e-105	E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBL	V4M8U6	1e-105	V4M8U6_EUTSA; Uncharacterized protein
STRING	Bostr.19424s1150.1.p	1e-122	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-81	C3H family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s1150.2.p

Publications ? help Back to Top
Yan Z,Jia J,Yan X,Shi H,Han Y Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence. Plant Mol. Biol., 2017. 95(6): p. 549-565 [PMID:29076025]