PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0193.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 135aa    MW: 15644.2 Da    PI: 10.7178
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind63.64.6e-2012101298
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           F  ++y+i++d++ +++isws+++nsf++++  ef + +Lp+  +   nf+SF+ +L+  gFk+vk + +         eF hk+F ++
  Bostr.20129s0193.1.p  12 FYIRVYQIVDDPSSDSIISWSKSNNSFIIWNVGEFRRMILPTSVEFGiNFSSFISKLHSHGFKRVKGPGQ--------LEFGHKYFVRD 92 
                           8899*************************************98776449******************996........6********** PP

                           XXXXXXXXX CS
          HSF_DNA-bind  90 kkellekik 98 
                           + ell+++ 
  Bostr.20129s0193.1.p  93 QPELLKNMM 101
                           *****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.2E-238100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-278103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-239100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-1812100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-71235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-76476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVHNFPRELS SFYIRVYQIV DDPSSDSIIS WSKSNNSFII WNVGEFRRMI LPTSVEFGIN  60
FSSFISKLHS HGFKRVKGPG QLEFGHKYFV RDQPELLKNM MVEALTAKRN AKRAKAKTKK  120
DRVQVECLLQ HLRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-14610014117Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474381.14e-59PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0GJE42e-59R0GJE4_9BRAS; Uncharacterized protein
STRINGBostr.20129s0193.1.p7e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.13e-24Winged helix-turn-helix transcription repressor DNA-binding