PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20129s0514.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 718aa MW: 81728.1 Da PI: 6.2312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20129s0514.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.6	8.5e-23	104	187	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ Bostr.20129s0514.1.p 104 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----TRRKETRTGCQAMIRLRLIDFDRWKVDQVKLDHNHSFD 187 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-20	104	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-27	313	407	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	596	635	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-6	606	633	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-5	610	637	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MIGNSVYSPS DQSLSPNPNL GITMEEGCTQ SSDHLVVEED LPIDDNPDLD IDLEDDDCDG 60 LLQIDATNSG CDAAFGESNE KCLMPPPPPA TGMEFDSYDD AYSYYNSYAR ELGFAIRVKS 120 SWTKRNSKEK RGAVLCCNCE GFKMVKEANT RRKETRTGCQ AMIRLRLIDF DRWKVDQVKL 180 DHNHSFDPQR AQNSKSHKKS SSLAASAANT NPQPPLHVQV RTIKLYRTLA VDTPPPHGTS 240 NNSCGETSHD HFHSSRRLEL RGSFRVLQDF FFQIQLTSPN FLYLIDLSDD GTLKNVFWID 300 PRARAAYSHF GDVVLFDTTC LSNTYELPLV AFVGIDHHGD SILLGTGLVA DQSFETYIWL 360 FRAWLTCMSG RPPQTFITEQ CKAMRAAVSE VFPRAHHRLS LTHVLQNIFH SVVELQDSEL 420 FRMTLNSVVH GCLKVEEFET AWEEMLIRFG LTNNETIRHM FQDREQWAPV YLKDTFLAGA 480 LTFRLGNVAA PSIFSGYVHE HSSLREFLEG YESFLDKKYT KQALCDSESS KFIPELKTTH 540 PYESQMAKVF TVEIFRRFQD EVSAMSSCFG ITQVHSNGSA SSYVVKEREG EKVRDFEVIY 600 ETSAEAQVRC FCVCGGFSFN GYQCRHVLLL LSHNGLQEVP PQYILQRWRK DVKRLYVADF 660 GSGRVDIMNP DQWYAHLHRR AMQVVEQGMR SKEHCRVAWE AFKECANRVQ FVTEKPS*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MIGNSVYSPS DQSLSPNPNL GITMEEGCTQ SSDHLVVEED LPIDDNPDLD IDLEDDDCDG  60
LLQIDATNSG CDAAFGESNE KCLMPPPPPA TGMEFDSYDD AYSYYNSYAR ELGFAIRVKS  120
SWTKRNSKEK RGAVLCCNCE GFKMVKEANT RRKETRTGCQ AMIRLRLIDF DRWKVDQVKL  180
DHNHSFDPQR AQNSKSHKKS SSLAASAANT NPQPPLHVQV RTIKLYRTLA VDTPPPHGTS  240
NNSCGETSHD HFHSSRRLEL RGSFRVLQDF FFQIQLTSPN FLYLIDLSDD GTLKNVFWID  300
PRARAAYSHF GDVVLFDTTC LSNTYELPLV AFVGIDHHGD SILLGTGLVA DQSFETYIWL  360
FRAWLTCMSG RPPQTFITEQ CKAMRAAVSE VFPRAHHRLS LTHVLQNIFH SVVELQDSEL  420
FRMTLNSVVH GCLKVEEFET AWEEMLIRFG LTNNETIRHM FQDREQWAPV YLKDTFLAGA  480
LTFRLGNVAA PSIFSGYVHE HSSLREFLEG YESFLDKKYT KQALCDSESS KFIPELKTTH  540
PYESQMAKVF TVEIFRRFQD EVSAMSSCFG ITQVHSNGSA SSYVVKEREG EKVRDFEVIY  600
ETSAEAQVRC FCVCGGFSFN GYQCRHVLLL LSHNGLQEVP PQYILQRWRK DVKRLYVADF  660
GSGRVDIMNP DQWYAHLHRR AMQVVEQGMR SKEHCRVAWE AFKECANRVQ FVTEKPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20129s0514.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009322	0.0	AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBank	AC011717	0.0	AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430024.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_010430027.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X3
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1J3JD88	0.0	A0A1J3JD88_NOCCA; Protein FAR1-RELATED SEQUENCE 8
STRING	Bostr.20129s0514.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Bostr.20129s0514.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]