PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2021s0020.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 183aa MW: 21159.3 Da PI: 8.3649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2021s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.6e-24	25	108	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAk++GF vr+ + ++s +g++ r++ C+k+g+++++ ++ + ++ r gCka++ vk+ek+gkw+vt++ +eHnH+l+ Bostr.2021s0020.1.p 25 DFYVDYAKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFSTNNPRS------SCSSAREGCKATILVKMEKSGKWVVTRFIKEHNHSLQ 108 6**************************************998877......9999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-22	25	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MMTGDLKPHE PYVGMEFESE EEAKDFYVDY AKRLGFVVRM MQRRRSGIDG RTLARRLGCN 60 KQGFSTNNPR SSCSSAREGC KATILVKMEK SGKWVVTRFI KEHNHSLQQL IGSPYNSLAD 120 KDKKIKELME EIECQDRLCV AYWDRLVSFI DNVEHFTEEL SLKVRDIVEN IKKLECQIQT 180 RA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2021s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT012077	0.0	BT012077.1 Arabidopsis thaliana At4g12850 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002863287.2	1e-112	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	1e-21	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	D7MVJ0	1e-110	D7MVJ0_ARALL; Far-red impaired responsive family protein
STRING	Bostr.2021s0020.1.p	1e-135	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-109	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Bostr.2021s0020.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]