PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20505s0101.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 300aa    MW: 34398.4 Da    PI: 5.2985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20505s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.1e-34531792128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           ppG++F P+deel+ +yLk+  +g++ +l +v i++v+iy+++P++L +k+++++++ +fF+++++k  +g r +r  + gyW+a+  +
  Bostr.20505s0101.1.p  53 PPGYKFVPKDEELILHYLKPFSQGDRYSLLNVpIHHVNIYESNPQQLSEKYDKGNEKEWFFISERTKIGKGGRMKRGGDGGYWNASVAT 141
                           9*************************9999999**************97776665555566666777899******99*********** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++ + ++  vg k+ L +y g++++g+k dW+m+ey +
  Bostr.20505s0101.1.p 142 KKINA-GKGIVGHKTALEYYVGKQSNGVKGDWLMQEYWF 179
                           ****9.9999***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-4241198IPR003441NAC domain
PROSITE profilePS5100538.71752200IPR003441NAC domain
PfamPF023656.7E-1753177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSIPPRNKRK ARSSLEQQTQ PAEPPRNPEI PSSSSSSAAD NFFSPATKPL VFPPGYKFVP  60
KDEELILHYL KPFSQGDRYS LLNVPIHHVN IYESNPQQLS EKYDKGNEKE WFFISERTKI  120
GKGGRMKRGG DGGYWNASVA TKKINAGKGI VGHKTALEYY VGKQSNGVKG DWLMQEYWFE  180
SSDDNNENKV DHALCKIYLC PKAAKKKKAE EEENEKLKKE EVVLEEEIEQ LDYHQPDQSQ  240
PRDIVYQQPQ YCVLPSQDQK TLPQQLAFPY NLDDSSEFIS FEQQLVIPDD FEDFLNDFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-225020618174NAC domain-containing protein 19
3swm_B1e-225020618174NAC domain-containing protein 19
3swm_C1e-225020618174NAC domain-containing protein 19
3swm_D1e-225020618174NAC domain-containing protein 19
3swp_A1e-225020618174NAC domain-containing protein 19
3swp_B1e-225020618174NAC domain-containing protein 19
3swp_C1e-225020618174NAC domain-containing protein 19
3swp_D1e-225020618174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20505s0101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431409.11e-134PREDICTED: NAC transcription factor 29-like
TrEMBLD7LVH11e-130D7LVH1_ARALL; Uncharacterized protein
STRINGBostr.20505s0101.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.11e-109NAC domain containing protein 64