PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20505s0102.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 169aa    MW: 19790.3 Da    PI: 5.3305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20505s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.11.2e-2181301128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           lp+GfrF+P+++e+ +++Lkkk+ g+++++ +v +e+ di++ +P+dLp     +e++wy+F+++++++ t        ++  W   g+
  Bostr.20505s0102.1.p   8 LPVGFRFRPSNSEMSNYFLKKKALGEPMKTRTVPEEChDIFSRHPRDLPGY--PREEHWYYFCRKRNNQVTC------NSHNLWTPIGQ 88 
                           79****************************88888889***********43..4789*******98876542......23457****** PP

                   NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++vl+   +g+lvg+k+    +  +++++ k +W+m+e +l
  Bostr.20505s0102.1.p  89 ETNVLDPknNGALVGIKQFDNIFLSDEEEAPKYNWFMDEISL 130
                           *****98778888*****998888999999*********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-286147IPR003441NAC domain
PROSITE profilePS5100530.5978147IPR003441NAC domain
PfamPF023651.6E-109129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEPIYRALPV GFRFRPSNSE MSNYFLKKKA LGEPMKTRTV PEECHDIFSR HPRDLPGYPR  60
EEHWYYFCRK RNNQVTCNSH NLWTPIGQET NVLDPKNNGA LVGIKQFDNI FLSDEEEAPK  120
YNWFMDEISL PQTVADTDWV LCHIFGKKIK PEFFDLRIIE SESEEDAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20505s0102.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566271e-107DQ056627.1 Arabidopsis thaliana no apical meristem family protein (At3g56520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191211.15e-98NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLA0A178VFA97e-98A0A178VFA9_ARATH; Uncharacterized protein
STRINGBostr.20505s0102.1.p1e-124(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-101NAC family protein