PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20505s0113.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

WRKY

Protein Properties

Length: 258aa MW: 29178 Da PI: 5.351

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20505s0113.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85.8	4e-27	133	193	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqKe+ g +fpr+YYrCt++ +Cp+kk+v+r +edp ++ +tY+g+H+++ Bostr.20505s0113.1.p 133 DDNYTWRKYGQKEILGFTFPRAYYRCTHQklyKCPAKKQVQRLDEDPYTFRVTYRGSHTCH 193 8**************************9999***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-26	128	193	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-24	131	194	IPR003657	WRKY domain
SMART	SM00774	1.6E-33	132	194	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	133	193	IPR003657	WRKY domain
PROSITE profile	PS50811	20.231	133	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEEIMSMIFN GINLVKELEF SLSSQELTES DLSSSLSSIS TLFGDANERL TILLAWRNSL 60 AQNQPEPQPI PMLDMMMQTE PALMQDHWLR YPLMQTVEGD DTSRPRHRRR KKDIGEEETV 120 LVAAVGRMKI PPDDNYTWRK YGQKEILGFT FPRAYYRCTH QKLYKCPAKK QVQRLDEDPY 180 TFRVTYRGSH TCHFFTTSSI SSAPATTTTA NVPAVVNMAE AMIGNMDSVV PLGEPYFSHH 240 CLVPGDDGDG DTWNSPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-20	133	192	9	68	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	112	RRRKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20505s0113.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516245.1	1e-155	PREDICTED: WRKY transcription factor 55-like
Swissprot	Q9SHB5	8e-77	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	D7LVF4	1e-154	D7LVF4_ARALL; Predicted protein
STRING	Bostr.20505s0113.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	4e-67	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	Bostr.20505s0113.1.p

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]