PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 253aa    MW: 28036.8 Da    PI: 8.0485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06224246223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C++ F+++ +L +Hi + H
  Bostr.20903s0001.1.p 224 VCPKCSRGFRDPVDLLKHIDKdH 246
                           7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.7E-12457No hitNo description
PROSITE profilePS510397.8261059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.8E-101049IPR000058Zinc finger, AN1-type
PfamPF014281.7E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.3E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.1E-891146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.02E-993141No hitNo description
PROSITE profilePS510398.11498151IPR000058Zinc finger, AN1-type
PfamPF014285.7E-8101139IPR000058Zinc finger, AN1-type
SMARTSM001540.0082101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.891223251IPR007087Zinc finger, C2H2
PROSITE patternPS000280225246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CLEVFCLDHR SYMKHDCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKAVKKKK CPVPRCRELL TFSNTIKCRD  120
CSIDHCLKHR FGPDHSCPGP KIPESSFSFM GFLSTNSKEA PTSSSSSSSS SRWSSLFASA  180
EASISRLGND ICQKLQFASG SDGNSEKMQE RNGKQNCGKV TVDVCPKCSR GFRDPVDLLK  240
HIDKDHRGTS KA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319783.11e-169zinc finger (C2H2 type, AN1-like) family protein
RefseqNP_191307.11e-169zinc finger (C2H2 type, AN1-like) family protein
SwissprotQ9SCM41e-170SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A178VKM11e-163A0A178VKM1_ARATH; Uncharacterized protein
TrEMBLD7LVT61e-165D7LVT6_ARALL; Uncharacterized protein
STRINGBostr.20903s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-170C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]