PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0111.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 274aa    MW: 30540.6 Da    PI: 5.1441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-2970128259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY  +Hnh+
  Bostr.20903s0111.1.p  70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 128
                           69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3061130IPR003657WRKY domain
PROSITE profilePS5081131.50264130IPR003657WRKY domain
SuperFamilySSF1182902.48E-2565130IPR003657WRKY domain
SMARTSM007746.4E-3469129IPR003657WRKY domain
PfamPF031061.1E-2471128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MHRRAAIQES DDEEDETYND VVPESPSSCE DSKISKPTPK KRRNVEKRVV SVPIADVEGS  60
KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPSKLMIT  120
YACDHNHPFP SSATNNKSHH HHHRSSVVLK ISKKEEEYEE EEELTVAAVE EPPVGLDLSH  180
VDSPLLLGGC YSEIGEFGWF YDASISSSSG SSNFLDVTLE RGFSVGEEED ESLFGDLGDL  240
PDCASVFRRG TVTTEDQHRR CDFGAIPFCD SSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2047131680Disease resistance protein RRS1
5w3x_D2e-2047131680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0111.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211560.0AF421156.1 Arabidopsis thaliana WRKY transcription factor 69 (WRKY69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567073.21e-175WRKY DNA-binding protein 69
SwissprotQ93WV51e-176WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A178V7K81e-172A0A178V7K8_ARATH; WRKY69
STRINGBostr.20903s0111.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-169WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]