PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20903s0171.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 256aa MW: 29344.1 Da PI: 6.5137

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20903s0171.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.2	1.5e-29	89	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+ Bostr.20903s0171.2.p 89 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLM 175 9****************************************999..999**********************************98 PP FAR1 91 p 91 p Bostr.20903s0171.2.p 176 P 176 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-27	89	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNEMG ENSGQAMIEQ DEKVSPDSIP 60 LAVADMAEVQ GDEPYVGQEF ESEAAAHGFY NAYATKVGFV IRVSKLSRSR HDGSPIGRQL 120 VCNKEGYRLP SKRDKVIRQR AETRVGCRAM ILIRKENSGK WVITKFVKEH NHPLMPGRVR 180 RGCIYDQYPN EHDKIQELMQ QLAAEKKRAA TYKRHLEMLF EQIEQHNEIL SKRIQHIVDN 240 VRNLEQRDHQ QNHQV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20903s0171.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058089	0.0	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBank	AY143081	0.0	AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002878273.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Refseq	XP_020882000.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
TrEMBL	D7LWD6	1e-180	D7LWD6_ARALL; Far-red impaired responsive family protein
STRING	Bostr.20903s0171.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Bostr.20903s0171.2.p