PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.21132s0002.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

TCP

Protein Properties

Length: 172aa MW: 19271.3 Da PI: 9.5294

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.21132s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	44.2	7.1e-14	13	71	4	66
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..s 66 ++++ +++h kvggRdRR+Rl+a++a ++ L++eLGf +d++t + + ++tg + Bostr.21132s0002.1.p 13 ATRSLKDRHVKVGGRDRRIRLPASVAPQLSNLTKELGFQTDGET------KCRARHFAATGHgvN 71 567789*************************************5......777777777777542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-12	16	56	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	9.658	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDSRNEINNR QKATRSLKDR HVKVGGRDRR IRLPASVAPQ LSNLTKELGF QTDGETKCRA 60 RHFAATGHGV NTTPNDVIHS NKKFQNYTNC GNNHPINIDG DNVDINNFFP YTGINTGNHE 120 MVCPVTTKTY YATSSTFPAK DRVDVSGESS QNQKQQQQQS HPQFELVWVL N*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.21132s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495849.1	2e-52	PREDICTED: transcription factor TCP16-like
Swissprot	Q9M1U4	5e-42	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	7e-51	D7LNL8_ARALL; Uncharacterized protein
STRING	Bostr.21132s0002.1.p	1e-126	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	2e-41	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Bostr.21132s0002.1.p

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]