PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.21132s0005.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

TCP

Protein Properties

Length: 120aa MW: 12829.3 Da PI: 7.5226

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.21132s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.6	1.9e-29	14	91	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec 73 a +++++++h kvggRdRR+Rl+a++a ++F L++eLGf +d++t+ WLl++a+pai ++tg++ +++ +c Bostr.21132s0005.1.p 14 ARTTTSSKDRHVKVGGRDRRIRLPASVAPQLFNLTKELGFQTDGETVGWLLRNAEPAIFAATGLGVNHSifsdnsIRC 91 5567899*********************************************************77777332221223 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-25	18	84	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.183	20	74	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MDSRKEMNNI QKAARTTTSS KDRHVKVGGR DRRIRLPASV APQLFNLTKE LGFQTDGETV 60 GWLLRNAEPA IFAATGLGVN HSIFSDNSIR CLETELEAAG YETATDASSA ATTTATTTV*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.21132s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495849.1	2e-41	PREDICTED: transcription factor TCP16-like
Swissprot	Q9M1U4	1e-37	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	4e-37	D7LNL8_ARALL; Uncharacterized protein
TrEMBL	R0HIU4	3e-37	R0HIU4_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.21132s0005.1.p	6e-83	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	4e-39	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Bostr.21132s0005.1.p

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]