PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.21132s0007.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 203aa    MW: 23076.8 Da    PI: 8.4944
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.21132s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.2e-18131165135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+Cgt k+plWR+gp+g  tLCnaCG++yr  +l
  Bostr.21132s0007.1.p 131 CSHCGTRKSPLWREGPRGAGTLCNACGIRYRTGRL 165
                           *******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.347125161IPR000679Zinc finger, GATA-type
SMARTSM004018.5E-17125175IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15128187No hitNo description
Gene3DG3DSA:3.30.50.107.4E-15129163IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.41E-18130179No hitNo description
PROSITE patternPS003440131156IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16131165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAREDVVVHK EEEEDLGTAM QKIPIPFNEL EQSPVDFVYG FADGGREIIE DSNLLLEDSR  60
EFDDLNHNKF IDDSNDSKLF GNSTNPPTAT RSRFCVPKRS RNKRGRPKRR CFKSAACPFD  120
SNFVDITDKS CSHCGTRKSP LWREGPRGAG TLCNACGIRY RTGRLLPEYR PASSPDFKPN  180
VHSNFHRKVM EIRRERNSPP TQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103RSRNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.21132s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503167.11e-105PREDICTED: GATA transcription factor 14-like
SwissprotQ9M1U26e-92GAT14_ARATH; GATA transcription factor 14
TrEMBLD7LNM13e-94D7LNM1_ARALL; Predicted protein
STRINGBostr.21132s0007.1.p1e-148(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.13e-83GATA transcription factor 14