PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2128s0008.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 406aa    MW: 46325.5 Da    PI: 5.3057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2128s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.17.8e-45371671128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatg 87 
                          l+pG+rFhP+deel+++yLk++v+gk+++l ++i evdiyk+ePw L   +k+k+++kew+fFs  dk+ a  + +++r+tk+gyW+ tg
  Bostr.2128s0008.1.p  37 LAPGIRFHPSDEELISYYLKREVQGKPMRL-DAIGEVDIYKHEPWGLAvhSKLKTRDKEWFFFSALDKNPAGaSVKRSRTTKQGYWNITG 125
                          579***************************.99**************8534889999********999877425577789********** PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          kd+e+ +  ++  +g+ k+Lvfy+grap g++t+Wvmheyrl
  Bostr.2128s0008.1.p 126 KDREIRRGdGKVIIGMIKILVFYTGRAPYGRRTNWVMHEYRL 167
                          ******98455569**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-5031187IPR003441NAC domain
PROSITE profilePS5100550.6937187IPR003441NAC domain
PfamPF023653.6E-2439167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVIQEQVRMD REYIIKKPGG ALPTPAEIPA TAAEASLAPG IRFHPSDEEL ISYYLKREVQ  60
GKPMRLDAIG EVDIYKHEPW GLAVHSKLKT RDKEWFFFSA LDKNPAGASV KRSRTTKQGY  120
WNITGKDREI RRGDGKVIIG MIKILVFYTG RAPYGRRTNW VMHEYRLTEN DEGLQLDAFV  180
LCRVFLKQNT WKPSGSRYAP FLEEEWDDDV ERAVSPVPVV VDANRINEIQ QIDDNNKKVD  240
DEPLTRDSSV APLPYCVLDK EALLHLVQYK RKRQIDSNGN SNSSSQITQD HCSSTETIVD  300
TGAAEPLEIS ERVAISVIES SFANMIDDLE NEQEPVTKMV PASSFTKRIK DLLKEKDEMV  360
VFRETQTRER MEVEIVINYL EDMINTLGKE NEELRKNKCN KGQLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-363319016171NAC domain-containing protein 19
3swm_B8e-363319016171NAC domain-containing protein 19
3swm_C8e-363319016171NAC domain-containing protein 19
3swm_D8e-363319016171NAC domain-containing protein 19
3swp_A8e-363319016171NAC domain-containing protein 19
3swp_B8e-363319016171NAC domain-containing protein 19
3swp_C8e-363319016171NAC domain-containing protein 19
3swp_D8e-363319016171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2128s0008.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026886e-45CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495071.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQY01e-103NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A397ZF441e-107A0A397ZF44_BRACM; Uncharacterized protein
TrEMBLM4EZ751e-107M4EZ75_BRARP; Uncharacterized protein
STRINGBostr.2128s0008.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2022046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.14e-99NAC domain containing protein 77
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]