PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2128s0009.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 366aa    MW: 40024.3 Da    PI: 8.3666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2128s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043154176123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Bostr.2128s0009.1.p 154 YQCKTCDRTFPSFQALGGHRASH 176
                          9***********99999998887 PP
2zf-C2H213.10.00029232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Bostr.2128s0009.1.p 232 HECGICGAEFTSGQALGGHMRRH 254
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.54E-9153176No hitNo description
PfamPF139122.1E-12153178IPR007087Zinc finger, C2H2
SMARTSM003550.028154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471154181IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SuperFamilySSF576679.54E-9227254No hitNo description
Gene3DG3DSA:3.30.160.607.4E-4230256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11231256IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93232256IPR007087Zinc finger, C2H2
SMARTSM003550.047232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEALEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVSS PARDMEEEST DHDSKDNALG  60
NDDGNHKKDG VITSSSSSAS WSSQNNPTSK AAEDEEDQDI ANCLILLAQG NSLPHSNHHL  120
TNSNNNNNAY RFTSRRFLET SSSNGGSKAG YYVYQCKTCD RTFPSFQALG GHRASHKKPK  180
ATSFYSNLDL KKNIYANDAV SLVTTTTVYN YNKNNNNRSL VVYGKARNNK VHECGICGAE  240
FTSGQALGGH MRRHRGAVVV PAVAAPTVTV ATAAANTELS LSSMSFDQIS DGQDHLVMPA  300
KKKARKTVVS LDLDLNLLAP EDENRVNGFS FASKQNHEQE HQQKKQREEP KSLVLSAPTL  360
VDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2128s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196059.10.0C2H2-type zinc finger family protein
TrEMBLQ84K310.0Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGBostr.2128s0009.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-168C2H2 family protein