PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2128s0069.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 27070.3 Da PI: 7.5611

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2128s0069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	80	132	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eql Le +F+++ +++ e++ +LAk+l+L+ +qV vWFqNrRa++k Bostr.2128s0069.1.p 80 NKRLTSEQLASLELHFQEDFKLDSERKLKLAKELSLKPSQVAVWFQNRRARWK 132 5679************************************************9 PP
2	HD-ZIP_I/II	106.3	2.3e-34	78	166	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE +F+e+ kL++erK +la+eL l+p qvavWFqnrRAR+k k+lE+ y++L+++y+a+ +e++ L++ev++Lr+ Bostr.2128s0069.1.p 78 KKNKRLTSEQLASLELHFQEDFKLDSERKLKLAKELSLKPSQVAVWFQNRRARWKVKHLEESYDSLRQEYEAVWKEKQILHDEVKKLRA 166 589************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-18	66	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-19	72	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	74	134	IPR001356	Homeobox domain
SMART	SM00389	6.5E-17	77	138	IPR001356	Homeobox domain
CDD	cd00086	1.53E-14	78	135	No hit	No description
Pfam	PF00046	7.4E-16	79	132	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEWSMTSNVQ NERVDSMPPP WLESDYSNSL RSFNYNPYAG NSSNYPAYTQ TGPVISVPES 60 EKIINAYQCP SNNNEMIKKN KRLTSEQLAS LELHFQEDFK LDSERKLKLA KELSLKPSQV 120 AVWFQNRRAR WKVKHLEESY DSLRQEYEAV WKEKQILHDE VKKLRAIILR DQGLMMNINQ 180 IAGGGQTNVF YSVKETPHNK LICDVGEEAE SYNTKRSGFD DEQQPNRQRR SN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2128s0069.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM214233	1e-100	KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds.
GenBank	KM214234	1e-100	KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879296.1	1e-110	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	3e-84	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	D7LWT8	1e-111	D7LWT8_ARALL; Predicted protein
STRING	Bostr.2128s0069.1.p	1e-173	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-86	homeobox 51

Link Out ? help Back to Top
Phytozome	Bostr.2128s0069.1.p

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]