PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2199s0029.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 329aa    MW: 36496.5 Da    PI: 4.8949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2199s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102532931055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Bostr.2199s0029.1.p 253 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 293
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14244309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-11252297No hitNo description
PfamPF000109.9E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSYSET TATLAAYHHQ GSHWTGGFCF  60
SQESSSYSGY CTVVPRQEED NNGMEDATIN TNLYLVGEET CECDVAEYSG KSLLPLENAA  120
ENHDHNMLQP ENSLKTITDE KLFNPCESSK KRTRATSNDK NKRANKARRS QKGIEMSGDK  180
DNSGDEELTE KAAGKRKTKP LKLQKTCCSD DESNGIDTSF SKEDGEDSKA LNLNGKTRAS  240
RGAATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  300
SDDLWMYAPI AYNGMDIGLD LKLNALTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2199s0029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775840.0AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464970.0DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888660.10.0transcription factor bHLH84
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLD7L2Q60.0D7L2Q6_ARALL; Basic helix-loop-helix protein
STRINGBostr.2199s0029.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.10.0bHLH family protein