PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22157s0023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 294aa    MW: 33125.3 Da    PI: 6.6135
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22157s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072432752254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            +yp+++++++L +++gL+ +q+ +WF N+R +
  Bostr.22157s0023.1.p 243 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 275
                           58*****************************87 PP
2ELK22.72.3e-08196217122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK +L++++++++ ++++E++
  Bostr.22157s0023.1.p 196 ELKLELKQGFKSRIEDVREEIM 217
                           9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-192872IPR005540KNOX1
PfamPF037908.7E-173071IPR005540KNOX1
SMARTSM012561.1E-2482137IPR005541KNOX2
PfamPF037911.3E-1886136IPR005541KNOX2
PROSITE profilePS512139.202196216IPR005539ELK domain
PROSITE profilePS5007111.823216279IPR001356Homeobox domain
SuperFamilySSF466892.48E-16218282IPR009057Homeodomain-like
SMARTSM003896.3E-11218283IPR001356Homeobox domain
CDDcd000863.07E-12219280No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25223281IPR009057Homeodomain-like
PfamPF059203.3E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQEAALGMIG ATVGGDHGDA AAVAEQNRQM KGEIATHPMY EQLLAAHVAC LRVATPIDQL  60
PIIEAQLSQS HHLLRSYAST AVGYSHHDRH ELDNFLAQYV MVLCSFKDQL QQHVRVHAVE  120
AVMACREIEN NLHSLTGATL GEGSGATMSE DEDDFQMDFS SDNSGVDFSG GHDMTGFGPL  180
LPTESERSLM ERVRQELKLE LKQGFKSRIE DVREEIMRKR RAGKLPGDTT TVLKNWWQQH  240
CKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHNN SHSLTSLKSK RKH*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22157s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3084510.0AF308451.1 Arabidopsis thaliana homeodomain transcription factor KNAT7 (KNAT7) mRNA, complete cds.
GenBankAY0843980.0AY084398.1 Arabidopsis thaliana clone 106887 mRNA, complete sequence.
GenBankBT0260590.0BT026059.1 Arabidopsis thaliana At1g62990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430375.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLR0GI400.0R0GI40_9BRAS; Uncharacterized protein
STRINGBostr.22157s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]