PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 214aa    MW: 24544.6 Da    PI: 5.7524
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-1694138347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W+teE+ l++d+ +++G+g+Wk+I+r+  k+R++ q+ s+ qky
  Bostr.22252s0001.1.p  94 PWSTEEHRLFLDGLEKYGKGDWKSISRECVKTRSPTQVASHAQKY 138
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3354IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-6660IPR009057Homeodomain-like
PROSITE profilePS5129418.13586143IPR017930Myb domain
SuperFamilySSF466896.68E-1790143IPR009057Homeodomain-like
SMARTSM007174.9E-1091141IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.7E-1691142IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-1092138IPR009057Homeodomain-like
PfamPF002491.2E-1294138IPR001005SANT/Myb domain
CDDcd001675.39E-1194139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASIPQWTRD DDKRFELALV QFPEGSPSFL ENIAQLLQKP LEEVKYYYEA LVDDVALIES  60
GKVALPKYPE DDDVSLKEAT QSKKLRKKIR KGIPWSTEEH RLFLDGLEKY GKGDWKSISR  120
ECVKTRSPTQ VASHAQKYFL RQELGIKRGK RLSIHDMTLP GDAENVTVPG SNLNSKGQQL  180
QFGDQIPPDQ YYHYSQDNFG LFDDDDDKWF SKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290KKLRKKIRK
28389KLRKKIR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115607e-77AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134287e-77AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026867e-77CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486370.11e-103PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN64e-39SRM1_ARATH; Transcription factor SRM1
TrEMBLD7L9117e-98D7L911_ARALL; Uncharacterized protein
STRINGBostr.22252s0001.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-100MYB_related family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]