PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0013.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 398aa    MW: 42710.1 Da    PI: 7.9411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047181203123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+++F++   L  H  +H
  Bostr.22252s0013.1.p 181 YQCKTCDRTFPSFQALGGHRASH 203
                           9***********99999998887 PP
2zf-C2H2130.00032260282123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  Bostr.22252s0013.1.p 260 HECGICGAEFTSGQALGGHMRRH 282
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.6E-9180203No hitNo description
PfamPF139122.3E-12180205IPR007087Zinc finger, C2H2
SMARTSM003550.028181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576676.6E-9255282No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4258284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-11259284IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93260284IPR007087Zinc finger, C2H2
SMARTSM003550.047260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEAAAEAVSA AKEQSLILKG KRTKRQRPQS PIPFSIIPPM SSQEPDAEEE STSLVSKEKS  60
LNDEINNNNN KNDNNTLING VTSSSSASSS SNNNATLKAT ADEEDQDMAN CLILLAQGHS  120
LPHHQPQPHP QQQTRQLMIS YQESGNNNNA YRSSSRRFLE TSSSNGTTAN GGGGRSGYYV  180
YQCKTCDRTF PSFQALGGHR ASHKKPKAAT GLHSNHDLKK SIYDDAVSLH LNNVLTTTPN  240
NNSNHRSLVV YGKASNNKVH ECGICGAEFT SGQALGGHMR RHRGAVVAAA AASTATVAVA  300
ATAATANTAL SLSPMSFDPM SDGPIQAPVK RARSAVVSLD LDLNLPAPED ENRVNGLSFA  360
SKKEHEQEHE QTQQKKQREE QKSLVLSSAP TLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484714.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLD7L8Z40.0D7L8Z4_ARALL; Uncharacterized protein
STRINGBostr.22252s0013.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-133C2H2 family protein