PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0130.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 506aa    MW: 56449.7 Da    PI: 7.026
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-1479125148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT eEde l +av  + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Bostr.22252s0130.2.p  79 KGGWTLEEDETLRRAVGTFKGKSWKKIAEFFH-DRTEVQCLHRWQKVL 125
                           688*****************************.************986 PP
2Myb_DNA-binding62.68e-20131177148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+eEde++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Bostr.22252s0130.2.p 131 KGPWTQEEDEKIVELVEKYGPAKWSVIAESLP-GRIGKQCRERWHNHL 177
                           79******************************.*************97 PP
3Myb_DNA-binding543.9e-17183226146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Bostr.22252s0130.2.p 183 KDAWTSEEEVALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 226
                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.61974125IPR017930Myb domain
SMARTSM007172.2E-1278127IPR001005SANT/Myb domain
PfamPF002493.8E-1379125IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-1580135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1981135IPR009057Homeodomain-like
CDDcd001675.40E-1182125No hitNo description
PROSITE profilePS5129432.344126181IPR017930Myb domain
SuperFamilySSF466892.43E-32128224IPR009057Homeodomain-like
SMARTSM007173.0E-18130179IPR001005SANT/Myb domain
PfamPF002491.3E-18131177IPR001005SANT/Myb domain
CDDcd001674.35E-16133177No hitNo description
Gene3DG3DSA:1.10.10.601.1E-27136185IPR009057Homeodomain-like
PROSITE profilePS5129421.745182232IPR017930Myb domain
SMARTSM007177.4E-16182230IPR001005SANT/Myb domain
PfamPF002494.4E-15183226IPR001005SANT/Myb domain
CDDcd001674.35E-12185228No hitNo description
Gene3DG3DSA:1.10.10.603.1E-22186231IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSYSFNPAAS SPDEMDLQEE TGKVKIEDQC VENKQSTPAS CSSVSEGSAG SSHKSPTVAS  60
PATASPTHRR TSGPIRRAKG GWTLEEDETL RRAVGTFKGK SWKKIAEFFH DRTEVQCLHR  120
WQKVLNPDLV KGPWTQEEDE KIVELVEKYG PAKWSVIAES LPGRIGKQCR ERWHNHLNPG  180
INKDAWTSEE EVALMNAHRI HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KSEFYLITGR  240
LPPPTTAKNG VPDSVTKRSS SAQKRGSDSV TQTPSRTTDI NNPDEDGNCQ LNSSVPLEEI  300
VTASRMTGVN EYSCSPQFLN PEPLPENGEV AVNGYHLYYK PQIEYYMASE ADTQRMSGYE  360
CSCSPIASPV SFFTPPPCRN EYSNGLAPRS PESFLREAGR TYPNTPSIFR KRRRRVVVPD  420
NKNAAKTDEA KEVDQKVNDG KDSSESPDCE EIQKNGSNAY NLSPPYRIRS KRTAVFKSRQ  480
LEFISAEEDK ADDETKSSEK DMLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67782315158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67782315158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409413RKRRR
2410415KRRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0130.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426490.0AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196510.0AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486505.10.0PREDICTED: transcriptional activator Myb-like isoform X2
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLR0HXM60.0R0HXM6_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.22252s0130.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]