PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0218.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 308aa    MW: 34753.5 Da    PI: 7.5114
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0218.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.9e-06426326
                          S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          + lC+ f+  G C  G++C F+H+
  Bostr.22252s0218.1.p  4 RILCK-FFVHGSCLKGENCEFSHD 26
                          569**.7777*************6 PP
2zf-CCCH20.39.7e-073454526
                          --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           C f+++ G+C y +rC++ H+
  Bostr.22252s0218.1.p 34 VCTFYQK-GICLYASRCRYDHV 54
                          5******.*************7 PP
3zf-CCCH17.38.6e-0693115326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +++C+ fa+ G C++G+ C+ +Hg
  Bostr.22252s0218.1.p  93 YPICS-FAAAGDCPRGNHCPHMHG 115
                           78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.84128IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4629IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7092956IPR000571Zinc finger, CCCH-type
SMARTSM003560.0143055IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.90190117IPR000571Zinc finger, CCCH-type
SMARTSM003560.1190116IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.36E-13147223No hitNo description
Gene3DG3DSA:3.30.40.103.8E-10152218IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00384158218No hitNo description
SMARTSM001842.4E-7159216IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.342159217IPR001841Zinc finger, RING-type
PfamPF000977.2E-8159216IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180183192IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.126246275IPR000571Zinc finger, CCCH-type
SMARTSM003560.15246274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEFSHDSKDP PNNVCTFYQK GICLYASRCR YDHVRGSSNI  60
PRPPLSSDSE SLDLSNNDGD KSSNVFCIHP REYPICSFAA AGDCPRGNHC PHMHGDLCAT  120
CGKKCLHPFR PEEREEHTKE CEKKQKHLEA LKQSQDIECS VCLDRVFSKP TPGERKFGLL  180
TECDHPFCIQ CIRNWRSSAP VSRMDVNSTL RACPICRKLS YFVVPSVVWY STPEQKTEII  240
DIYKAKLRSI DCKHFNFGNG NCPFGASCFY KHAYSDGHLE EVVLRHLGSQ EGDNIRLSEL  300
VGGLQIF*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0218.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486388.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_010486389.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLR0G6500.0R0G650_9BRAS; Uncharacterized protein
STRINGBostr.22252s0218.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein