PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.22252s0282.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 225aa MW: 25955.9 Da PI: 9.0828

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.22252s0282.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.7	2e-28	54	143	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+ +GF +r+++ +ks r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka + vk+ek+ kw+vtk+++eHnH+l Bostr.22252s0282.1.p 54 SFYDNYATVMGFVMRVDAFRKSMRDGTVVWRRLVCNKEGFRRLRPRR-SESRKPRAITREGCKALIIVKREKSVKWVVTKFVKEHNHPL 141 5******************************************99.9*************************************9 PP FAR1 90 ap 91 p Bostr.22252s0282.1.p 142 LP 143 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-26	54	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MFVCCVAVEG NSLPEEDVQM IEKSDGMKTV TDEASPMVEP FIGMEFESEE AVKSFYDNYA 60 TVMGFVMRVD AFRKSMRDGT VVWRRLVCNK EGFRRLRPRR SESRKPRAIT REGCKALIIV 120 KREKSVKWVV TKFVKEHNHP LLPLSPNVRR NSQLSQTPDE KDAKIRELSA ELCRERKRCA 180 ALQHQLDMAL KEMEEHSNHL SININNVIQR VREIESNTFT KPLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.22252s0282.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004031	0.0	BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds.
GenBank	BT005083	0.0	BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452983.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	D7L6L3	1e-130	D7L6L3_ARALL; Far-red impaired responsive family protein
STRING	Bostr.22252s0282.1.p	1e-166	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-130	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Bostr.22252s0282.1.p