PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.22252s0299.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 455aa MW: 50053.1 Da PI: 7.4775

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.22252s0299.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	266	313	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Bostr.22252s0299.1.p 266 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 313 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.94E-10	260	317	No hit	No description
SuperFamily	SSF47459	1.44E-16	260	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	262	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	266	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MENELFMNAG VSHPPVMTPP SSSSAMLNWV STQPGEPGHS GDLSRDCLFW EKSTDQSIFD 60 SALSSLVSSP TPSNSNFSGG GGVGGDNFII RELIGKFGNI GEIYGNVSGS CYATPMSSPP 120 PRHMMVTKTT TTPLAEFSGD PGFAERAARF SCFGSRSFNG RTNSPFLINK VPVATNEKLP 180 RVSSSPALKP LASQVPAGES SGEISRKRKT KSKHNSPPTS KEIEEKEDTD PKRNKKSEEN 240 EDKTKSVDPY KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCNKVTGKAL 300 MLDEIINYVQ SLQRQVEFLS MKLSSVNTTR LDFNMDAFMS KDIFPSSNNL MHQQVLQLDS 360 SAETLLGDHH NKNLQLNSKI SSNNIMNPLE TSATRSFISH LPTLAHYTDS ISQYSTFSED 420 DLHSIIHMGF AQNRIHELNQ GPSNQVPSHM KAEL*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MENELFMNAG VSHPPVMTPP SSSSAMLNWV STQPGEPGHS GDLSRDCLFW EKSTDQSIFD  60
SALSSLVSSP TPSNSNFSGG GGVGGDNFII RELIGKFGNI GEIYGNVSGS CYATPMSSPP  120
PRHMMVTKTT TTPLAEFSGD PGFAERAARF SCFGSRSFNG RTNSPFLINK VPVATNEKLP  180
RVSSSPALKP LASQVPAGES SGEISRKRKT KSKHNSPPTS KEIEEKEDTD PKRNKKSEEN  240
EDKTKSVDPY KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCNKVTGKAL  300
MLDEIINYVQ SLQRQVEFLS MKLSSVNTTR LDFNMDAFMS KDIFPSSNNL MHQQVLQLDS  360
SAETLLGDHH NKNLQLNSKI SSNNIMNPLE TSATRSFISH LPTLAHYTDS ISQYSTFSED  420
DLHSIIHMGF AQNRIHELNQ GPSNQVPSHM KAEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.22252s0299.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187390.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	R0G587	0.0	R0G587_9BRAS; Uncharacterized protein
STRING	Bostr.22252s0299.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.22252s0299.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]