PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0379.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 212aa    MW: 23495.3 Da    PI: 12.1949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0379.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000121551881755
                           HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           N +   L +l+P +     +K s   iLe+A++YI+ L+
  Bostr.22252s0379.1.p 155 NRKVRVLGRLVPGC-----GKQSVPVILEEATDYIQALE 188
                           55556677778777.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-8135204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.804138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-7154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MASLISDIEP PTSTTDLVRR KKRSSVYSFG ESHTRWRSEK QQRIYSAKLI QALQQVRLNS  60
SAAAVSFPTA QKRGKAVREA ADRALAVSAR GRTLWSRAIL ANRIKLKFRK QKRPRATTAI  120
PAMTTVVSSS NNSNRSRKRR VSVLRLNKKS IPAVNRKVRV LGRLVPGCGK QSVPVILEEA  180
TDYIQALEMQ VRAMNSLAEL LSSYSSVPPP I*
Functional Description ? help Back to Top
Source Description
UniProtbHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0379.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205800.0AC020580.11 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence.
GenBankAY0812880.0AY081288.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds.
GenBankAY0887440.0AY088744.1 Arabidopsis thaliana clone 9391 mRNA, complete sequence.
GenBankAY0933900.0AY093390.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888482.11e-114transcription factor bHLH148
RefseqXP_020888484.11e-114transcription factor bHLH148
SwissprotQ9C8Z91e-103BH148_ARATH; Transcription factor bHLH148
TrEMBLD7L5J91e-112D7L5J9_ARALL; Uncharacterized protein
STRINGBostr.22252s0379.1.p1e-149(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61571318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.25e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sukweenadhi J, et al.
    Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress.
    Microbiol. Res., 2015. 172: p. 7-15
    [PMID:25721473]