PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0027.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 282aa    MW: 31093.8 Da    PI: 4.031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0027.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-171262155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ++y+GVr++  +g+WvAeIr+p   g r +r +lg+f + ++Aa a+++a+k+++g
  Bostr.23794s0027.2.p 12 CDYRGVRQRT-WGKWVAEIREP---G-RgTRLWLGTFSSSYDAALAYDEAAKAMYG 62
                          68*****999.**********8...4.45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.76E-311271No hitNo description
PfamPF008475.4E-131262IPR001471AP2/ERF domain
PROSITE profilePS5103220.6391370IPR001471AP2/ERF domain
SMARTSM003806.5E-361376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-291471IPR001471AP2/ERF domain
PRINTSPR003676.7E-91425IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-191471IPR016177DNA-binding domain
PRINTSPR003676.7E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRGKGGPENG ICDYRGVRQR TWGKWVAEIR EPGRGTRLWL GTFSSSYDAA LAYDEAAKAM  60
YGQSARLNLP DITNGSSSTA ATVSGSVTAF SDESEVCARE DTNVRSGFAQ VKLEDSSDGY  120
VTLNSSQFIK EELNVKEEVR EEHNSPDGFG IGQDPKRESL DDWLMGNGNE QEPLDFGVDE  180
TFDINELLGV LDDNNAPGQD TMQGQVDREP NFSYQMQFPD SNLLGSLNPM EISDPGVDYG  240
YPYMQLREME NNGIDLDRHR FQDLDIQDLD FGGGKDVHGA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-181470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0027.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070200.0AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence.
GenBankAF0852790.0AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankBT0265050.0BT026505.1 Arabidopsis thaliana At2g40340 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885570.11e-179dehydration-responsive element-binding protein 2C isoform X2
SwissprotQ8LFR21e-167DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLD7LF311e-176D7LF31_ARALL; Uncharacterized protein
STRINGBostr.23794s0027.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-134ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]