PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0032.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 295aa    MW: 33109.7 Da    PI: 9.011
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.11.1e-091203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m+vkgL+++hvkSHLQ+YR+
  Bostr.23794s0032.1.p  1 MNVKGLSIAHVKSHLQMYRS 20
                          9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-8121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNVKGLSIAH VKSHLQMYRS KKTDDPNQGD QGFSFEHGAG YTYNLSQLPM LQSFDQRPSS  60
SLGYGGGSWT DHRRHIYRSP WRGLTARDNT RTRQTLFSPQ PGEKFQGVSN SILDDKNKTI  120
SFRINSHEAA HENKGVAEVV PRIHRSFLEG MKTFNKSWGQ SLSSNPKSST ATRPQDHIAT  180
TLNSYQWENA LVAEGSENVL RKKRLLLSDD CNKSDQDLDL SLSLKVPRTH DNLGECLLED  240
EEKEHDDHQD SQGLSLSLSS SGLSKHGRTI RKEDQTDHKK RKISVLASPL DLTL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881704.11e-180uncharacterized protein LOC9315925
TrEMBLD7LEH71e-179D7LEH7_ARALL; Uncharacterized protein
STRINGBostr.23794s0032.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-160G2-like family protein